##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane3_Index5_2.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	20844275	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	31.982913293938022	33.0	31.0	34.0	30.0	34.0
2	32.11834088736595	33.0	31.0	34.0	30.0	34.0
3	32.18743616652534	34.0	31.0	34.0	30.0	34.0
4	35.69993314711114	37.0	35.0	37.0	33.0	37.0
5	35.65923189940643	37.0	35.0	37.0	33.0	37.0
6	35.63543049590355	37.0	35.0	37.0	33.0	37.0
7	35.65054606120865	37.0	35.0	37.0	33.0	37.0
8	35.63866754780389	37.0	35.0	37.0	33.0	37.0
9	37.313790765090175	39.0	37.0	39.0	34.0	39.0
10-14	37.49954044455851	39.2	37.2	39.4	33.6	39.4
15-19	38.434658945921605	40.0	38.0	41.0	33.6	41.0
20-24	38.24757818633653	40.0	38.0	41.0	33.0	41.0
25-29	37.93521755014267	40.0	37.8	41.0	32.8	41.0
30-34	37.742020242968394	40.0	37.0	41.0	32.4	41.0
35-39	37.72994386228353	40.0	37.0	41.0	32.0	41.0
40-44	37.42839946220246	39.6	36.6	41.0	31.2	41.0
45-49	36.98786121369057	39.0	35.4	40.8	30.6	41.0
50-54	36.66811726481252	38.8	35.0	40.4	30.6	41.0
55-59	36.38575036071056	38.4	35.0	40.4	30.2	41.0
60-64	35.591039697950634	37.2	34.2	40.0	29.2	41.0
65-69	34.72050192199057	35.6	33.8	39.0	28.2	41.0
70-74	33.80487093938264	35.0	33.0	37.8	26.8	39.8
75-79	32.83951130946027	35.0	32.4	36.4	26.0	39.0
80-84	31.877091038186744	35.0	31.8	35.2	24.6	37.2
85-89	30.78489111278757	34.0	31.0	35.0	21.0	36.0
90	29.85984434574961	34.0	31.0	35.0	2.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
9	1.0
10	219.0
11	2304.0
12	6874.0
13	13721.0
14	21642.0
15	29395.0
16	36365.0
17	43024.0
18	49440.0
19	57985.0
20	67504.0
21	79214.0
22	92832.0
23	109834.0
24	131407.0
25	157346.0
26	190409.0
27	230981.0
28	280497.0
29	342610.0
30	422522.0
31	524845.0
32	665205.0
33	863882.0
34	1177810.0
35	1713634.0
36	2661692.0
37	3917272.0
38	4444883.0
39	2458015.0
40	50911.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	24.34788928854566	12.152296014133377	11.071308548750196	52.428506148570776
2	21.795776752882077	18.84652597876468	35.17784812780611	24.179849140547134
3	25.774978083558697	21.114821513893933	22.501956460856505	30.608243941690866
4	27.717493192426048	26.796201677552094	19.20273894519777	26.283566184824085
5	29.30478411338286	29.540177668281984	21.60842183269942	19.546616385635733
6	24.5997464032208	32.54232114556501	21.606017617050057	21.251914834164136
7	21.53475483285992	19.005686372364472	37.29449570421248	22.165063090563127
8	21.63029617728059	22.42354275702606	29.02201104762641	26.924150018066932
9	21.482243201490327	21.21329043228723	31.55257816252439	25.751888203698055
10-14	24.4623389368299	26.273943740476195	24.694306731042595	24.56941059165131
15-19	24.81676569691715	25.196325894671094	25.16185959058353	24.825048817828225
20-24	24.58170945141094	25.437306775952067	25.518959528460893	24.462024244176096
25-29	24.410353215990003	25.484528689035823	25.465967261110855	24.639150833863322
30-34	24.472926465889305	25.419312512356036	25.394729511275777	24.713031510478885
35-39	24.476887366373926	25.55302068540214	25.37545023403721	24.59464171418673
40-44	24.42682701729303	25.39891587620751	25.53146524838269	24.64279185811677
45-49	24.37771351763076	25.454690391577085	25.440512800476466	24.727083290315694
50-54	24.394107294385396	25.5630905872674	25.469536844301622	24.573265274045582
55-59	24.40544154790063	25.487399156454337	25.44076014101377	24.666399154631264
60-64	24.319461487210077	25.53026840752299	25.534049807378405	24.616220297888532
65-69	24.354300436548744	25.636781358075904	25.504368941876717	24.504549263498635
70-74	24.419608001552895	25.569758546174292	25.41535951421953	24.595273938053282
75-79	24.403469973807038	25.522365968867337	25.486708612828483	24.587455444497138
80-84	24.35280772852451	25.656061530347895	25.48555702097719	24.5055737201504
85-89	24.450124480429604	25.618596016655037	25.39617421021419	24.53510529270117
90	24.19686269907411	25.74591780611854	25.589073391565066	24.46814610324229
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	76.77639543711643
2	45.9756258934292
3	56.383222025249566
4	54.00105937725014
5	48.851400499018595
6	45.85166123738493
7	43.69981792342305
8	48.55444619534753
9	47.23413140518838
10-14	49.031749528481214
15-19	49.64181451474538
20-24	49.043733695587036
25-29	49.049504049853326
30-34	49.185957976368194
35-39	49.07152908056066
40-44	49.0696188754098
45-49	49.10479680794645
50-54	48.967372568430974
55-59	49.071840702531894
60-64	48.93568178509861
65-69	48.85884970004738
70-74	49.01488193960618
75-79	48.99092541830418
80-84	48.85838144867491
85-89	48.985229773130776
90	48.66500880231639
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	71.0
1	39.5
2	6.0
3	4.0
4	6.5
5	7.5
6	11.0
7	20.5
8	30.5
9	46.5
10	57.0
11	78.0
12	131.0
13	217.0
14	346.0
15	546.5
16	973.0
17	1748.0
18	2967.0
19	5156.5
20	6601.0
21	8743.5
22	14328.5
23	22824.5
24	34753.0
25	51376.0
26	73806.5
27	103359.5
28	138291.5
29	178367.5
30	200382.0
31	223389.5
32	271249.5
33	323730.5
34	379073.0
35	432219.0
36	486719.5
37	544971.0
38	593078.0
39	633241.5
40	654481.0
41	667634.5
42	693522.0
43	715373.0
44	726887.0
45	731725.0
46	728447.5
47	719278.5
48	716444.5
49	714149.0
50	711237.0
51	704431.5
52	696383.0
53	684753.0
54	677811.5
55	676675.5
56	665074.0
57	651300.5
58	631909.5
59	605678.5
60	592085.0
61	576717.0
62	542951.5
63	499738.0
64	449894.0
65	399493.0
66	344484.0
67	286914.5
68	234108.5
69	184343.5
70	159451.0
71	137760.0
72	98101.5
73	66281.0
74	41729.5
75	23892.5
76	12875.0
77	6530.0
78	2903.5
79	1210.0
80	677.0
81	493.5
82	227.5
83	109.5
84	54.5
85	27.5
86	16.5
87	14.0
88	11.0
89	7.5
90	8.0
91	6.0
92	4.5
93	4.0
94	1.5
95	0.0
96	0.0
97	0.0
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.0
2	0.00877459158449982
3	0.04538416423694276
4	0.04506273305260078
5	0.0450003658078777
6	0.008342818351801633
7	0.014603530225925344
8	0.011187724207246353
9	0.007589613934761463
10-14	0.010351043631884535
15-19	0.009064359398443937
20-24	0.01248112491319559
25-29	0.00504215186184216
30-34	0.010701259698406398
35-39	0.006681930650022608
40-44	0.0020111037683008884
45-49	5.440342731997156E-4
50-54	0.0010228228134583717
55-59	0.0016935105682495553
60-64	6.831612037357979E-4
65-69	0.007275858719000781
70-74	0.00297923530561749
75-79	0.004269757523348737
80-84	0.0017693107579899038
85-89	0.0013221855881291144
90	0.012483043905340914
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.0844275E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	51.55368461799004
#Duplication Level	Relative count
1	100.0
2	29.558347648915344
3	15.190164196396468
4	9.403339858575366
5	6.396068874595501
6	4.6632176101633975
7	3.539610882505693
8	2.8634493228396787
9	2.342095801206504
10++	25.796012943949503
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCAGG	4390045	2.6181536	5.482514	1
CCTGG	4360020	2.5866206	6.247696	1
CTTCT	4607980	2.5276563	5.715866	1
CTGGA	4220440	2.4696474	8.868862	1
TCCAG	4149615	2.3796637	5.8623557	2
CTGCT	4095985	2.336599	5.076602	1
CTCCT	4134795	2.3115876	7.8046484	1
CTGGG	3808500	2.3055134	8.660412	1
CAGGA	3819995	2.2470975	5.459828	1
CCCAG	3761600	2.1985142	7.461144	1
CTTCA	3983700	2.1967266	5.8569884	1
CTCCA	3898235	2.1908178	8.195093	1
CAGAA	3719735	2.115118	5.0697646	1
CTCTG	3608780	2.058668	6.533966	1
CTGCA	3493375	2.003332	5.038962	1
CTGGC	3169970	1.8806127	5.5226855	1
TGGAA	3254775	1.8785865	5.104794	2
CTGAA	3298580	1.8658112	5.553185	1
CTCAG	3057105	1.7531462	6.2040386	1
CTTTG	3048725	1.7064563	5.055004	1
CTGGT	2863355	1.6667502	5.191671	1
CTTGG	2809550	1.6354303	5.398246	1
CTCCC	2746460	1.564871	5.173705	1
>>END_MODULE
